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Modules - Standard Software

The following is a list of software available for users on our cluster. To access any of these packages, use this command in your PBS script or on the command line:

module load modulename

For more information on the module command, see our module HOWTO page.

Many of these packages have multiple versions, to see all available versions, type

module avail

The default version is shown in bold below.

Users are not limited to the list here. If you need a different package or another version, contact us. You can also install programs in your own home directory.

Module Name Versions Description More info
acml 5.2.0
5.3.1
AMD Core Math Library (ACML) Website
amber 12
14.2014.04
AMBER is a collection of molecular dynamics simulation programs Website
atlas 3.10.1 Automatically Tuned Linear Algebra Software Website
cmake 2.8.10.2
2.8.11
2.8.12.1
CMake is a cross-platform, open-source build system Website
fftw 3.3.3 fftw - Fastest Fourier Transform in the West. Website
gaussian 09-D01-2013 Gaussian 09 provides state-of-the-art capabilities for electronic structure modeling Website
gcc 4.6.4
4.7.3
4.8.0
4.8.1
4.8.2
4.9.0
GCC compiler suite Website
graphviz 2.30.1
2.32.0
2.36.0
Graph Visualization Software Website
gromacs 4.6.1
4.6.2
4.6.3
4.6.5
5.0.2
GROMACS is a collection of molecular dynamics simulation programs. Website
gv 5.0.8 GaussView is a GUI for Gaussian Website
intelcc 12.0.2
2013.1.046
2015.1
Intel compiler suite enviroment Website
ipython 0.13.2
1.0.0
1.1.0
IPython is an interactive shell for Python. Website
jed 0.99-19 JED is a freely available text editor Website
matlabcr 8.4 Matlab Compiler Runtime Website
mvapich2 2.0a
2.0b
MPI implementation based on MPICH with added Infiniband+CUDA support Website
namd 2.9 NAMD is a scalable parallel molecular dynamics package Website
numpy 1.7.1
1.8.0
NumPy is the fundamental package for scientific computing with Python. Website
openmpi 1.6.5
1.7.2
1.7.3
Open source MPI-2 implementation Website
pp 1.6.4 Parallel Python is a python module which provides a mechanism for parallel execution of python code on SMP and clusters. Website
python 2.7.4
2.7.5
2.7.6
Python programming language Website
python3 3.3.2
3.3.3
Python programming language version 3 Website
R 2.15.3
3.0.2
The R Project for Statistical Computing Website
scipy 0.12.0
0.13.2
SciPy is open-source software for mathematics, science, and engineering. Website
stata 12.1
13.0
Stata is a general-purpose statistical software package Website